You said:
Take something easier, like S2xE1, for example. How do the straight lines look there? Some will be the great circles of S2, some will be straight lines of E1, but what about the rest? The best I'm able to visualize them is as sort of spirals, with two coordinates going in a great circle while the third steadily moves upwards. How would look the lines, planes, hyperplanes, in the various non-isotropic geometries?
Lines are simply geodesics. The path continues within the space without twisting or curving to the left, right, up, down, etc. It might help to "flatten" out the space, like flattening out the torus to a square. Draw the straight line, and then curve up the space again. A line in a torus may be a spiral twisting around and through the hole. Some spaces cannot be completely flattened out, but they can sometimes be "unrolled" into a cylinder or spherinder, etc.
Planes are a bit tougher. To construct a "plane" in a 3-manifold, begin at a point, and consider its neighborhood. The neighborhood is "nearly Euclidean", so a plane can be constructed within the neighborhood. You can specify a line through the point, and construct the plane perpendicular to the line. This plane is "flat", not rounded like a bowl, or saddle shaped.
Now "extend" the surface beyond the neighborhood. Through the point, construct the set of lines (geodesics) within the tiny "plane". Extend the lines (as geodesics) as far as they will go. These lines form a surface, which contains the tiny "plane" in the neighborhood of the point.
Now you must "test" the surface. At each of the other points of the surface, the surface must be flat, not bowl-shaped or saddle-shaped. Also, the set of lines "geodesics" emanating from each point must remain IN the surface. They must not "leave" the surface like a tangent.
The test passes in isotropic spaces. For example, S3, the "planes" are S2. They may appear "round" to an outsider, but they are actually flat within the space. The concept of "flatness" does not emply zero curvature. For example, in H3, the horospheres have zero curvature, but are rounded. In S3, the Clifford surfaces have zero curvature, but are saddle shaped. The truly flat surfaces (planes) in S3 and H3 have positive and negative curvature, respectively.
In non-isotropic surfaces, the attempt to construct a "plane" at a point sometimes fails to remain flat everywhere, so the plane cannot be constructed.